DEPARTMENT CHAIR:                   CLINTON RUBIN
GRADUATE PROGRAM DIRECTOR: HELMUT STREY

Acerbo, A.S. (2011).  Alice L. Jee Memorial Young Investigator Award, $800.   International Bone & Mineral Society, Chicago, IL.

DeDora, D. (2011).  Graduate Research Fellowship Program, $121,500, National Science Foundation, Washington, DC.

DeDora, D. (2011).  Graduate Research Diversity Supplement, $101,436, National Science Foundation, Washington, DC.

Maramraju, S. H. (2011).  First place, Young Investigator Award, $600.  Society of Nuclear Medicine (SNM) Annual Meeting, San Antonio, TX.

Maramraju, S. H. (2011).  Basic Science Award, $100.  Young Professionals Committee, Society of Nuclear Medicine (SNM) Annual Meeting, San Antonio, TX.

Maramraju, S. H. (2011).  Graduate Scholarship Award, $1500.  Nuclear and Plasma Sciences Society (NPSS),  Institute of Electrical and Electronics Engineering (IEEE).
 
Maramraju, S. H. (2010).  Paul Phelps Continuing Research Grant, $500.  IEEE Medical Imaging Conference, Knoxville, TN.

Goren, A.D., Bonvento, M., Fernandez ,T.J., Abramovitch, K., Zhang, W., Roe, N., Seltzer, J., Steinberg, M., Colosi, D.C. (2011).  Evaluation of radiation exposure with Tru-Align intraoral rectangular collimation system using OSL dosimeters.  The New York State Dental Journal, 77(2): 22-27.

Claiborne, T. E., Girdhar, G., Gallocher-Lowe, S., Sheriff, J., Kato, Y. P., Pinchuk, L., Schoephoerster, . T., Jesty, J. & Bluestein, D. (2011).  Thrombogenic potential of innovia polymer valves versus Carpentier-Edwards perimount magna aortic bioprosthetic valves.  ASAIO Journal, 57(1):  26-31.

Feng, X Grossman, R. Stein, L. (2011).   PeakRanger: A cloud-enabled peak caller for ChIP-seq data.  BMC Bioinformatics, 12(1): 139.

Consortium, T. M., S. Roy, J. Ernst, P. V. Kharchenko, P. Kheradpour, N. Negre, M. L. Eaton, J. Landolin, M. , Bristow, C.A., Ma, L., M. Lin, M.F., Washietl, S., Arshinoff, B.I., Ay, F., Meyer, P.E., Robine, N., Washington, N.L., Di Stefano, L., Berezikov, E., Brown, C.D., Candeias, R., Carlson, J.W., Carr, A., Jungreis, I., Marbach, D., Sealfon, R., Tolstorukov, M.Y., Will, S., Alekseyenko, A.A., Artieri, C., Booth, B.W., Brooks, A.N., Dai, Q., Davis, C.A., Duff, M.O.,  Feng, X.  (2010).  Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE, Science 330, (6012): 1787-1797.

Gerstein, M. B., Lu, Z.J., Van Nostrand, E.L., Cheng, C., Arshinoff, B.I., Liu, T., Yip, K.Y.,  Robilotto, R., Rechtsteiner, A., Ikegami, K., Alves, P., Chateigner, A., Perry, M., Morris, M.,   Auerbach, R.K., Feng, X. et al. (2010).  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.  Science,  330(6012): 1775-1787.
                                                                                    
Nègre, N., Brown, C.D., Shah, P.K., Kheradpour, P., Morrison, C.A., Henikoff, J.G., Feng, X Ahmad, K., Russell, S., R. White, A.H., Stein, L., Henikoff, S., Kellis, M. & White, K.P.  (2010).  A comprehensive map of insulator elements for the Drosophila genome.  PLoS Genet, 6(1): e1000814,  DOI:10.1371/journal.pgen.1000814.

Wu, G., Feng, X. & Stein, L.  (2010).  A human functional protein interaction network and its application to cancer data analysis.  Genome Biology, 11(5): R53.

Soares , A.S., Engel, M. A., Stearns, R.,  Datwani, S., Olechno, J., Ellson, R., Skinner, J.M., Allaire, M. & Orville, A.M. (2011).  Acoustically mounted microcrystals yield high-resolution X-ray structures.Biochemistry, 50(21): 4399–4401.

Leigh, S.Y., Tattu, A., Mitchell, J.S.B., Entcheva, E. (2011).  M3: Microscope-based maskless micropatterning with dry film photoresist.  Biomedical Microdevices, 13(2): 375-81.

Maramraju, S. H., Smith, S. D, Junnarkar, S. S., Schulz, D., Stoll, S., Ravindranath, B., Purschke , M .L., Rescia, S., Southekal, S., Pratte, J. F., Vaska, P., Woody, C. L. & Schlyer, D. J.  (2011).  Small animal simultaneous PET/MRI: initial experiences in a 9.4 T microMRI.  Physics in Medicine and Biology, 56 2459 doi:10.1088/0031-9155/56/8/009,  2459-80.

Acerbo, A.S. (2010).  Perspective on X-ray scattering in bone research.  Brookhaven National Laboratory, Upton, NY.

Acerbo, A.S., Tommasini, S.M., Trinward, A., Judex, S., & Miller, L.M.  (2011).  Modulation of the Material Properties of Bone by Estrogen Withdrawal and Osteoporosis Treatments. Brookhaven National Laboratory, Upton, NY.

Engel, M. A. & Davis, S. (2011).  Financing Biotech in 2021.  JP Morgan /Connecticut Innovations / Center for Biotechnology / Fundamentals of the Bioscience Industry Program - Alumni Network Seminar Series, New York, NY.
 
Dudu, V., Dao, D., Engel, M. A., Prassad, A. & Vieira, E. (2011).  Social  Media in Healthcare. Mount Sinai School of Medicine / Center for Biotechnology / Fundamentals of the Bioscience Industry Program - Alumni Network Seminar Series, New York, NY.
 
Dudu, V., Dao, D., Engel, M. A., Prassad, A. & Vieira, E. (2010).  Integrating Personalized Health Care into Clinical Practice.  Mount Sinai School of Medicine / Center for Biotechnology / Fundamentals of the Bioscience Industry Program - Alumni Network Seminar Series, New York, NY.

Feng, X Grossman, R. & Stein, L. (2011).  Peak Ranger: A cloud-enabled peak caller for ChIP-seq data.  NHGRI modENCODE Consortium Meeting, Washington, DC.

Feng, X Grossman, R. & Stein, L. (2011).  Peak Ranger: A Cloud-Enabled Peak Caller for ChIP-seq Data.  Cold Spring Harbor The Biology of Genomes, Cold Spring Harbor, NY.
 
Feng, X Sabala M., Grossman, R. & Stein, L.  (2010).  Cloud Computing for Chromantin IP Sequencing Peak Calling.  Beyond the Genome, Boston, MA.

Feng,  X. & Stein. L. (2010).  High Resolution Peak Calling for Chromatin IP Sequencing.  Cold Spring Harbor Laboratory & Wellcome Trust Sanger Institute Genome Informatics Meeting, Cold Spring Harbor, NY.

Feng X., Zha Z., Liu C., Wang L. and Stein, L. (2010).  Get all ChIP-Seq peaks in one click: Two Integrated Pipelines for the modENCODE Peak Recalling Project.  NHGRI modENCODE Consortium Meeting, Washington, DC.

Green, D.E., Adler, B., Chan, M.,  Rubin, C.T. (2010).  A Collapse in Bone Marrow Storma Cells Caused by Sublethal Irradiation Precedes Damage to Trabecular Microarchitecture. Endocrine Fellow Forum at the American Society for Bone and Mineral Research Annual Conference, Toronto, Canada.

Maramraju, S. H. (2011).  Small Animal Simultaneous PET/MRI: Initial Experiences in a 9.4 T MicroMRI.  The Aarhus PET-MR Hybrid Scanner Workshop, Aarhus University Hospital, Skejby, Denmark.

Ren, H, Bhalla R.S., Miles,R.A., Mishail, A., Pan, R.,Waltzer, W.C. & Pan, Y.T. (2011).  Flexible Hybrid Cystoscopy/Optical Coherence Tomography for Early Bladder Cancer Diagnosis and Guided Tumor Resection.  Sigma XI Northeastern Research Symposium, Stony Brook, NY.

Sitharaman, Balaji, Rengaraj Sugumaran, Ajaykumar & Avti, P.K. (2011).  Photo-Physical Properties of Europium-Catalyzed Single Walled Carbon Nanotubes.   BMES 2011 Annual Meeting, Hartford, CT.

Acerbo, A.S. (2010).  Kramers-Kronig Transform.  Transformation of reflection FTIR data into absorbance units.  Brookhaven National Laboratory, Upton, NY.

Acerbo, A.S. (2010).  MultiROI. ROI-based statistical analysis of InfraRed integration maps.  Brookhaven National Laboratory, Upton, NY.

Maramraju, Sri H (2011).  PET Systems Scientist.  GE Health Care, Waukesha, WI.

Parvaz, Muhammad. (2011).  Postdoctoral Research Associate.  Medical Research Department, Brookhaven National Laboratory, Upton, NY.

Sheriff, Jawaad (2011).  Postdoctoral Associate.  Dept. of Biomedical Engineering, Stony Brook University, Stony Brook, NY.

Xin, Feng. (2011).  Assistant Professor,  McDermott Center for Human Growth & Development, UT Southwestern Medical Center, Dallas, TX.

Yuan, Zhijia. (2010).  Research Scientist.  Topcon Medical Systems, Inc., Paramus, NJ.

Engel, M.A. (2010).  Developmed Official Alumni Website: Fundamentals of the Bioscience Industry Program.